Selection Sampling for Targeted Inference in Mixture Models

One of the challenges in using Markov chain Monte Carlo for model analysis in studies with very large datasets is the need to scan through the whole data at each iteration of the sampler. The following matlab code and examples is about Selection Sampling from Large Data Sets for Targeted Inference in Mixture Models. keywords:Flow cytometry, large data sets, mixture models, rare events, resampling, selection sampling, sequential Monte Carlo

The source code and files included in this project are listed in the project files section, please make sure whether the listed source code meet your needs there.

Project Files: 

File NameSizeDate
biasresampleknownweights.m 415 December 23 2013 11:55:01
boxplotfn.m 2439 December 23 2013 11:55:01
boxSMClow.jpg 423001 December 23 2013 11:55:01
finalscatter.jpg 810973 December 23 2013 11:55:01
linewidthsizes.m 345 December 23 2013 11:55:01
masterselection.m 3750 December 23 2013 11:55:01
MCMCcomponents.jpg 631156 December 23 2013 11:55:01
mcmcsmc.m 3766 December 23 2013 11:55:01
MHstepfocus.m 603 December 23 2013 11:55:01
MHstepfocusBLOCK.m 904 December 23 2013 11:55:01
invwishpdf.m 1258 December 23 2013 11:55:01
loginvwishpdf.m 1247 December 23 2013 11:55:01
logmvnormpdf.m 355 December 23 2013 11:55:01
logmvtconvpdf.m 547 December 23 2013 11:55:01
mvnormixpdf.m 511 December 23 2013 11:55:01
mvnormpdf.m 359 December 23 2013 11:55:01
outer.m 461 December 23 2013 11:55:01
Plot_GM.m 2192 December 23 2013 11:55:01
resample.m 251 December 23 2013 11:55:01
sample_alpha.m 427 December 23 2013 11:55:01
sample_muSigma.m 626 December 23 2013 11:55:01
sample_zpidp.m 726 December 23 2013 11:55:01
std_rows.m 233 December 23 2013 11:55:01
unstd_rows.m 156 December 23 2013 11:55:01
muvar.jpg 422036 December 23 2013 11:55:01
pairplot2d.m 585 December 23 2013 11:55:01
plotgm.m 560 December 23 2013 11:55:01
quantilepath.jpg 483038 December 23 2013 11:55:01
randomMCMCcomponents.jpg 607404 December 23 2013 11:55:01
README.txt 1007 December 23 2013 11:55:01
sample_muSigmaselected.m 3056 December 23 2013 11:55:01
sample_zpiselected.m 2534 December 23 2013 11:55:01
selectedresample.m 408 December 23 2013 11:55:01
simulate.m 787 December 23 2013 11:55:01
SMCcomponents.jpg 596403 December 23 2013 11:55:01
SMCkpost.jpg 374875 December 23 2013 11:55:01
SMCscatter.jpg 1096803 December 23 2013 11:55:01
smcselection.m 8680 December 23 2013 11:55:01
yysave.mat 115715 December 23 2013 11:55:01

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