Amino acid conservation in matlab

The following Matlab project contains the source code and Matlab examples used for amino acid conservation. We analyzed the degree of conservation at each position in the multiple sequence alignment (MSA), taking into account of biochemical similarity between amino acids.

The source code and files included in this project are listed in the project files section, please make sure whether the listed source code meet your needs there.

Project Files: 

File NameSize
AAConservationIndex.m 1278
AnalysisInterSequenceDiversity.m 1870
AnalysisIntraSequenceDiversity.m 1397
Analysis_Output.txt 0
ExtractSequenceOut.m 4092
Gag_D_FinalAA.fasta 303745
Gag_J_FinalAA.fasta 2163
license.txt 1310
MatlabToolbox_ModelManual.pdf 228299
Start_ConservationAnalysis.m 2307