Cell segmentation and tracking in matlab

The following Matlab project contains the source code and Matlab examples used for cell segmentation and tracking. This program has been developed in collaboration with LCSB and BIOp at EPFL, Lausanne.

The source code and files included in this project are listed in the project files section, please make sure whether the listed source code meet your needs there.

Project Files: 

File NameSize
Documentation.pdf 788179
start.fig 2583
start.m 7696
curvature.m 1786
der_ENO1_minus.m 624
der_ENO1_plus.m 618
der_ENO2_minus.m 1250
der_ENO2_plus.m 1246
der_ENO3_minus.m 1525
der_ENO3_plus.m 1521
der_WENO_minus.m 1602
der_WENO_plus.m 1600
evolve2D.m 11015
evolve_kappa.m 1749
evolve_normal_ENO1.m 1463
evolve_normal_ENO2.m 1461
evolve_normal_ENO3.m 1463
evolve_normal_vector_ENO1.m 1302
evolve_normal_vector_ENO1_SD.m 1730
evolve_normal_vector_ENO2.m 1304
evolve_normal_vector_ENO2_SD.m 1640
evolve_normal_vector_ENO3.m 1304
evolve_normal_vector_ENO3_SD.m 1642
evolve_normal_vector_WENO.m 1302
evolve_normal_vector_WENO_SD.m 1640
evolve_normal_WENO.m 1465
evolve_vector_ENO1.m 674
evolve_vector_ENO2.m 672
evolve_vector_ENO3.m 672
evolve_vector_WENO.m 673
get_dt_kappa.m 360
get_dt_normal.m 356
get_dt_normal_kappa.m 399
get_dt_normal_vector.m 363
get_dt_normal_vector_kappa.m 408
get_dt_vector.m 351
get_dt_vector_kappa.m 396
init_kappa.m 256
init_normal_ENO1.m 231
init_normal_ENO2.m 231
init_normal_ENO3.m 231
init_normal_WENO.m 231
init_vector_ENO1.m 299
init_vector_ENO2.m 299
init_vector_ENO3.m 299
init_vector_WENO.m 301
kappa.bmp 1662
LLF_normal_vector.m 2407
reinit_SD.m 1688
retina.bmp 126646
select_der_normal.m 901
select_der_normal_vector_SD.m 1094
test.m 1385
upwind_ENO1.m 1072
upwind_ENO2.m 1590
upwind_ENO3.m 1865
upwind_WENO.m 2023
Thumbs.db 8192
cellCONV.m 3517
xlcontrol.m 4851
AddMum.m 1225
alignStack.m 554
CellTracking.m 6159
condCut.m 1033
correction.m 9246
dirfold.m 822
distance_other.m 798
FPtrack.m 14670
FPtracking.m 8631
goodfield.m 1329
Hungarian.m 9328
initialization.m 5256
kmeans.m 1570
look4BF.m 1565
main.m 1433
mask_correction.m 1942
output.m 5308
overlay.m 279
PostProcess.m 5685
protREAD.m 3366
Thumbs.db 6144
visua_video.m 109
WL_invest.m 1667
ANtiffread.m 1087
bgCorrection.m 1055
Black_PRO.m 1480
CircularHough_Grd.m 24930
createCircleImage.m 1022
cropWell.m 2429
FFTdetect.m 2967
findObjectBetweenLimits.m 1586
HOUGHdetect.m 2420
MidpointCircle.m 1357
prepare_HSC.m 6033
prepare_HSC2ren.m 4247
prepare_HSC_new2rename.m 4247
selectWell.fig 4573
selectWell.m 2917
shift4FFT.m 1669
test.m 150
tiffread.m 22832
well_screen.m 4541
license.txt 1511

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