MCMC Generalised Linear Mixed Models

The following source code and examples are about MCMC Generalised Linear Mixed Models.

The source code and files included in this project are listed in the project files section, please make sure whether the listed source code meet your needs there.

Project Files: 

File NameSizeDate
DESCRIPTION 435 January 05 2014 16:17:21
CITATION 739 January 05 2014 16:17:21
axes.pdf 6625 January 05 2014 16:17:21
CourseNotes.bib 14815 January 05 2014 16:17:21
CourseNotes.pdf 2574732 January 05 2014 16:17:21
CourseNotes.Rnw 3432 January 05 2014 16:17:21
buildCN.R 5624 January 05 2014 16:17:21
CourseNotes.Rnw 3462 January 05 2014 16:17:21
defaults.R 448 January 05 2014 16:17:21
Overview.Rnw 55454 January 05 2014 16:17:21
TEST.R 39559 January 05 2014 16:17:21
Tutorial.Rnw 45361 January 05 2014 16:17:21
Lecture1-006.pdf 5010 January 05 2014 16:17:21
Lecture1-011.pdf 5348 January 05 2014 16:17:21
Lecture1-015.pdf 12819 January 05 2014 16:17:21
Lecture1-023.pdf 5200 January 05 2014 16:17:21
Lecture1-027.pdf 23501 January 05 2014 16:17:21
Lecture1-034.pdf 17812 January 05 2014 16:17:21
Lecture1-041.pdf 82598 January 05 2014 16:17:21
Lecture1-049.pdf 4976 January 05 2014 16:17:21
Lecture1-052.pdf 175340 January 05 2014 16:17:21
Lecture1-055.pdf 164990 January 05 2014 16:17:21
Lecture1-058.pdf 104192 January 05 2014 16:17:21
Lecture1-060.pdf 112858 January 05 2014 16:17:21
Lecture1-065.pdf 14695 January 05 2014 16:17:21
Lecture1-071.pdf 15180 January 05 2014 16:17:21
Lecture1-075.pdf 4783 January 05 2014 16:17:21
Lecture1-dinvgamma.pdf 23501 January 05 2014 16:17:21
Lecture1-dnorm.pdf 5010 January 05 2014 16:17:21
Lecture1-dnorm1.pdf 5348 January 05 2014 16:17:21
Lecture1-Lsurface.pdf 12819 January 05 2014 16:17:21
Lecture1-MsurfaceMCMC.pdf 4976 January 05 2014 16:17:21
Lecture1-muvar.pdf 5200 January 05 2014 16:17:21
Lecture1-Pmarg.NI.pdf 4783 January 05 2014 16:17:21
Lecture1-Psurface.flat.pdf 14695 January 05 2014 16:17:21
Lecture1-Psurface.NI.pdf 15180 January 05 2014 16:17:21
Lecture1-Psurface.pdf 17812 January 05 2014 16:17:21
Lecture1-Psurface.persp.pdf 175340 January 05 2014 16:17:21
Lecture1-Psurface.persp2.pdf 164990 January 05 2014 16:17:21
Lecture1-PsurfaceMCMC.pdf 82598 January 05 2014 16:17:21
Lecture1-talk.BPMsurface.pdf 18193 January 05 2014 16:17:21
Lecture1-talk.dinvgamma.pdf 23652 January 05 2014 16:17:21
Lecture1-talk.dmu.pdf 21828 January 05 2014 16:17:21
Lecture1-talk.dnorm.pdf 4996 January 05 2014 16:17:21
Lecture1-talk.dnorm1.pdf 5361 January 05 2014 16:17:21
Lecture1-talk.Lsurface.pdf 12871 January 05 2014 16:17:21
Lecture1-talk.MLsurface.pdf 13078 January 05 2014 16:17:21
Lecture1-talk.MsurfaceMCMC.pdf 4993 January 05 2014 16:17:21
Lecture1-talk.muvar.pdf 5241 January 05 2014 16:17:21
Lecture1-talk.Pmarg.NI.pdf 4982 January 05 2014 16:17:21
Lecture1-talk.Psurface.flat.pdf 16868 January 05 2014 16:17:21
Lecture1-talk.Psurface.NI.pdf 18936 January 05 2014 16:17:21
Lecture1-talk.Psurface.pdf 17876 January 05 2014 16:17:21
Lecture1-talk.PsurfaceMCMC.pdf 82876 January 05 2014 16:17:21
Lecture1.tex 39019 January 05 2014 16:17:21
Lecture2-007.pdf 4600 January 05 2014 16:17:21
Lecture2-019.pdf 63488 January 05 2014 16:17:21
Lecture2-023.pdf 20024 January 05 2014 16:17:21
Lecture2-029.pdf 43365 January 05 2014 16:17:21
Lecture2-030.pdf 41969 January 05 2014 16:17:21
Lecture2-037.pdf 5229 January 05 2014 16:17:21
Lecture2-038.pdf 5515 January 05 2014 16:17:21
Lecture2-046.pdf 49878 January 05 2014 16:17:21
Lecture2-050.pdf 59098 January 05 2014 16:17:21
Lecture2-052.pdf 11868 January 05 2014 16:17:21
Lecture2-055.pdf 33269 January 05 2014 16:17:21
Lecture2-066.pdf 34138 January 05 2014 16:17:21
Lecture2-068.pdf 38700 January 05 2014 16:17:21
Lecture2-070.pdf 34324 January 05 2014 16:17:21
Lecture2-072.pdf 34283 January 05 2014 16:17:21
Lecture2-074.pdf 4651 January 05 2014 16:17:21
Lecture2-081.pdf 34665 January 05 2014 16:17:21
Lecture2-085.pdf 34625 January 05 2014 16:17:21
Lecture2-Bin1.pdf 34138 January 05 2014 16:17:21
Lecture2-Bin2.pdf 38700 January 05 2014 16:17:21
Lecture2-GLMM.VCV.pdf 33269 January 05 2014 16:17:21
Lecture2-hist.traffic.pdf 4600 January 05 2014 16:17:21
Lecture2-IC.pdf 34324 January 05 2014 16:17:21
Lecture2-ICI.pdf 34283 January 05 2014 16:17:21
Lecture2-invlogit.pdf 4648 January 05 2014 16:17:21
Lecture2-mcmc.traffic.pdf 63488 January 05 2014 16:17:21
Lecture2-prediction1.pdf 43365 January 05 2014 16:17:21
Lecture2-prediction2.pdf 41969 January 05 2014 16:17:21
Lecture2-prediction3.pdf 5229 January 05 2014 16:17:21
Lecture2-prediction4.pdf 5515 January 05 2014 16:17:21
Lecture2-separation1.pdf 34665 January 05 2014 16:17:21
Lecture2-separation2.pdf 34625 January 05 2014 16:17:21
Lecture2-talk-hist.traffic.pdf 4441 January 05 2014 16:17:21
Lecture2-talk-prediction1.pdf 43371 January 05 2014 16:17:21
Lecture2-talk-prediction2.pdf 41978 January 05 2014 16:17:21
Lecture2-talk-prediction3.pdf 5075 January 05 2014 16:17:21
Lecture2-talk-prediction4a.pdf 5117 January 05 2014 16:17:21
Lecture2-talk-prediction4b.pdf 5139 January 05 2014 16:17:21
Lecture2-traffic.pdf 3612 January 05 2014 16:17:21
Lecture2-vcv.traffic.pdf 20024 January 05 2014 16:17:21
Lecture2-y.pred.pdf 59098 January 05 2014 16:17:21
Lecture2-yfixed.int.pdf 11868 January 05 2014 16:17:21
Lecture2-yrandom.pdf 49878 January 05 2014 16:17:21
Lecture2.tex 56350 January 05 2014 16:17:21
Lecture3-005.pdf 49148 January 05 2014 16:17:21
Lecture3-018.pdf 46992 January 05 2014 16:17:21
Lecture3-025.pdf 48904 January 05 2014 16:17:21
Lecture3-028.pdf 5045 January 05 2014 16:17:21
Lecture3-BTcor.pdf 48904 January 05 2014 16:17:21
Lecture3-BTidh.pdf 46992 January 05 2014 16:17:21
Lecture3-mBTVCV.pdf 49148 January 05 2014 16:17:21
Lecture3-NIc.pdf 5045 January 05 2014 16:17:21
Lecture3.tex 28953 January 05 2014 16:17:21
Lecture4-005.pdf 11102 January 05 2014 16:17:21
Lecture4-011.pdf 27073 January 05 2014 16:17:21
Lecture4-014.pdf 14733 January 05 2014 16:17:21
Lecture4-017.pdf 63046 January 05 2014 16:17:21
Lecture4-022.pdf 14680 January 05 2014 16:17:21
Lecture4-026.pdf 14585 January 05 2014 16:17:21
Lecture4-030.pdf 4638 January 05 2014 16:17:21
Lecture4-034.pdf 8873 January 05 2014 16:17:21
Lecture4-037.pdf 8853 January 05 2014 16:17:21
Lecture4-040.pdf 8825 January 05 2014 16:17:21
Lecture4-ChickWeight.pdf 11102 January 05 2014 16:17:21
Lecture4-CWpred.1.pdf 14733 January 05 2014 16:17:21
Lecture4-CWpred.2.pdf 14680 January 05 2014 16:17:21
Lecture4-CWpred.3.pdf 14585 January 05 2014 16:17:21
Lecture4-parallel.pdf 27073 January 05 2014 16:17:21
Lecture4-RR2VCV.pdf 63046 January 05 2014 16:17:21
Lecture4-RRtoy.pdf 4633 January 05 2014 16:17:21
Lecture4-talk-parallel.pdf 27050 January 05 2014 16:17:21
Lecture4-talk-VCVpred.1.pdf 8890 January 05 2014 16:17:21
Lecture4-talk-VCVpred.2.pdf 8873 January 05 2014 16:17:21
Lecture4-talk-VCVpred.3.pdf 8844 January 05 2014 16:17:21
Lecture4-VCVpred.1.pdf 8873 January 05 2014 16:17:21
Lecture4-VCVpred.2.pdf 8853 January 05 2014 16:17:21
Lecture4-VCVpred.3.pdf 8825 January 05 2014 16:17:21
Lecture4.tex 23306 January 05 2014 16:17:21
Lecture5-011.pdf 32187 January 05 2014 16:17:21
Lecture5-016.pdf 34576 January 05 2014 16:17:21
Lecture5-024.pdf 34666 January 05 2014 16:17:21
Lecture5-029.pdf 50371 January 05 2014 16:17:21
Lecture5-039.pdf 62462 January 05 2014 16:17:21
Lecture5-043.pdf 4751 January 05 2014 16:17:21
Lecture5-046.pdf 63443 January 05 2014 16:17:21
Lecture5-asUV.pdf 32187 January 05 2014 16:17:21
Lecture5-HU.pdf 63443 January 05 2014 16:17:21
Lecture5-MN1.pdf 34666 January 05 2014 16:17:21
Lecture5-MN2.pdf 50371 January 05 2014 16:17:21
Lecture5-MVvUV2.pdf 34576 January 05 2014 16:17:21
Lecture5-PPZIP.pdf 4751 January 05 2014 16:17:21
Lecture5-talk-asUV.pdf 32382 January 05 2014 16:17:21
Lecture5-talk-MVvUV2.pdf 34775 January 05 2014 16:17:21
Lecture5-talk-spending.cor.pdf 10516 January 05 2014 16:17:21
Lecture5-ZIP.pdf 62462 January 05 2014 16:17:21
Lecture5.tex 39689 January 05 2014 16:17:21
Lecture6-006.pdf 9232 January 05 2014 16:17:21
Lecture6-bird.families.pdf 9232 January 05 2014 16:17:21
Lecture6.tex 14410 January 05 2014 16:17:21
Lecture7.tex 18657 January 05 2014 16:17:21
Lecture8-005.pdf 31736 January 05 2014 16:17:21
Lecture8-012.pdf 4684 January 05 2014 16:17:21
Lecture8-015.pdf 4407 January 05 2014 16:17:21
Lecture8-018.pdf 4423 January 05 2014 16:17:21
Lecture8-021.pdf 27800 January 05 2014 16:17:21
Lecture8-023.pdf 30393 January 05 2014 16:17:21
Lecture8-school1.pdf 4684 January 05 2014 16:17:21
Lecture8-school2.pdf 4407 January 05 2014 16:17:21
Lecture8-school3.pdf 4423 January 05 2014 16:17:21
Lecture8-sexratio.pdf 31736 January 05 2014 16:17:21
Lecture8-sexratio2.pdf 27800 January 05 2014 16:17:21
Lecture8-sexratio3.pdf 30393 January 05 2014 16:17:21
Lecture8.tex 13568 January 05 2014 16:17:21
Lecture9.tex 4607 January 05 2014 16:17:21
Overview-Sol.pdf 233105 January 05 2014 16:17:21
Overview-VCV.pdf 119890 January 05 2014 16:17:21
Overview.bib 21450 January 05 2014 16:17:21
Overview.pdf 459575 January 05 2014 16:17:21
Overview.Rnw 55454 January 05 2014 16:17:21
rgl1.pdf 61265 January 05 2014 16:17:21
rgl2.pdf 62385 January 05 2014 16:17:21
at.level.Rd 510 January 05 2014 16:17:21
at.set.Rd 545 January 05 2014 16:17:21
BTdata.Rd 779 January 05 2014 16:17:21
BTped.Rd 632 January 05 2014 16:17:21
commutation.Rd 604 January 05 2014 16:17:21
Ddivergence.Rd 637 January 05 2014 16:17:21
Dexpressions.Rd 1205 January 05 2014 16:17:21
Dtensor.Rd 1135 January 05 2014 16:17:21
evalDtensor.Rd 717 January 05 2014 16:17:21
gelman.prior.Rd 2103 January 05 2014 16:17:21
inverseA.Rd 1425 January 05 2014 16:17:21
knorm.Rd 578 January 05 2014 16:17:21
KPPM.Rd 426 January 05 2014 16:17:21
krzanowski.test.Rd 1259 January 05 2014 16:17:21
kunif.Rd 553 January 05 2014 16:17:21
leg.Rd 829 January 05 2014 16:17:21
list2bdiag.Rd 423 January 05 2014 16:17:21
MCMCglmm.Rd 9703 January 05 2014 16:17:21
MCMCglmmPackage.Rd 2146 January 05 2014 16:17:21
mult.memb.Rd 726 January 05 2014 16:17:21
PlodiaPO.Rd 618 January 05 2014 16:17:21
PlodiaR.Rd 850 January 05 2014 16:17:21
PlodiaRB.Rd 937 January 05 2014 16:17:21
plot.MCMCglmm.Rd 522 January 05 2014 16:17:21
plotsubspace.Rd 1470 January 05 2014 16:17:21
posterior.cor.Rd 563 January 05 2014 16:17:21
posterior.evals.Rd 502 January 05 2014 16:17:21
posterior.mode.Rd 727 January 05 2014 16:17:21
predict.MCMCglmm.Rd 1012 January 05 2014 16:17:21
prunePed.Rd 1463 January 05 2014 16:17:21
Ptensor.Rd 477 January 05 2014 16:17:21
rbv.Rd 1326 January 05 2014 16:17:21
residuals.MCMCglmm.Rd 799 January 05 2014 16:17:21
rIW.Rd 3140 January 05 2014 16:17:21
rtnorm.Rd 691 January 05 2014 16:17:21
sir.Rd 629 January 05 2014 16:17:21
sm2asreml.Rd 663 January 05 2014 16:17:21
spl.Rd 1274 January 05 2014 16:17:21
SShorns.Rd 448 January 05 2014 16:17:21
summary.MCMCglmm.Rd 1552 January 05 2014 16:17:21
Tri2M.Rd 1005 January 05 2014 16:17:21
MD5 20714 January 05 2014 16:17:21
NAMESPACE 891 January 05 2014 16:17:21
buildZ.R 10937 January 05 2014 16:17:21
commutation.R 185 January 05 2014 16:17:21
Ddivergence.R 436 January 05 2014 16:17:21
Dexpressions.R 3469 January 05 2014 16:17:21
Dtensor.R 1379 January 05 2014 16:17:21
find.components.R 2926 January 05 2014 16:17:21
gelman.prior.R 666 January 05 2014 16:17:21
inverseA.R 7572 January 05 2014 16:17:21
knorm.R 617 January 05 2014 16:17:21
KPPM.R 620 January 05 2014 16:17:21
krzanowski.test.R 926 January 05 2014 16:17:21
kunif.R 84 January 05 2014 16:17:21
list2bdiag.R 678 January 05 2014 16:17:21
MCMCglmm.R 52644 January 05 2014 16:17:21
mterms.R 1063 January 05 2014 16:17:21
mult.memb.R 533 January 05 2014 16:17:21
plot.MCMCglmm.R 461 January 05 2014 16:17:21
plotsubspace.R 2948 January 05 2014 16:17:21
posterior.cor.R 480 January 05 2014 16:17:21
posterior.evals.R 493 January 05 2014 16:17:21
posterior.mode.R 299 January 05 2014 16:17:21
predict.MCMCglmm.R 5810 January 05 2014 16:17:21
priorformat.R 4728 January 05 2014 16:17:21
prunePed.R 1390 January 05 2014 16:17:21
Ptensor.R 436 January 05 2014 16:17:21
rbv.R 4189 January 05 2014 16:17:21
residuals.MCMCglmm.R 227 January 05 2014 16:17:21
rIW.R 1616 January 05 2014 16:17:21
rtnorm.R 923 January 05 2014 16:17:21
sir.R 599 January 05 2014 16:17:21
sm2asreml.R 480 January 05 2014 16:17:21
spl.R 628 January 05 2014 16:17:21
split.direct.sum.R 915 January 05 2014 16:17:21
summary.MCMCglmm.R 3759 January 05 2014 16:17:21
test.R 326 January 05 2014 16:17:21
test2.R 327 January 05 2014 16:17:21
Tri2M.R 1542 January 05 2014 16:17:21
cs.h 6110 January 05 2014 16:17:21
cs_add.c 1369 January 05 2014 16:17:21
cs_addR.c 1371 January 05 2014 16:17:21
cs_amd.c 12603 January 05 2014 16:17:21
cs_cbind.c 1141 January 05 2014 16:17:21
cs_cbind.h 78 January 05 2014 16:17:21
cs_chol.c 2457 January 05 2014 16:17:21
cs_cholsol.c 781 January 05 2014 16:17:21
cs_compress.c 906 January 05 2014 16:17:21
cs_counts.c 2579 January 05 2014 16:17:21
cs_cov2cor.c 277 January 05 2014 16:17:21
cs_cov2cor.h 153 January 05 2014 16:17:21
cs_cumsum.c 509 January 05 2014 16:17:21
cs_dcmvnorm.c 2173 January 05 2014 16:17:21
cs_dcmvnorm.h 261 January 05 2014 16:17:21
cs_dfs.c 1369 January 05 2014 16:17:21
cs_directsum.c 1143 January 05 2014 16:17:21
cs_directsum.h 155 January 05 2014 16:17:21
cs_directsumupdate.c 378 January 05 2014 16:17:21
cs_dmperm.c 5782 January 05 2014 16:17:21
cs_dmvnorm.c 534 January 05 2014 16:17:21
cs_dmvnorm.h 156 January 05 2014 16:17:21
cs_droptol.c 236 January 05 2014 16:17:21
cs_dropzeros.c 214 January 05 2014 16:17:21
cs_dupl.c 1026 January 05 2014 16:17:21
cs_entry.c 448 January 05 2014 16:17:21
cs_ereach.c 990 January 05 2014 16:17:21
cs_etree.c 1187 January 05 2014 16:17:21
cs_fkeep.c 789 January 05 2014 16:17:21
cs_gaxpy.c 396 January 05 2014 16:17:21
cs_happly.c 548 January 05 2014 16:17:21
cs_house.c 684 January 05 2014 16:17:21
cs_inv.c 3141 January 05 2014 16:17:21
cs_inv.h 139 January 05 2014 16:17:21
cs_invR.c 3022 January 05 2014 16:17:21
cs_ipvec.c 294 January 05 2014 16:17:21
cs_kroneckerA.c 1096 January 05 2014 16:17:21
cs_kroneckerA.h 153 January 05 2014 16:17:21
cs_kroneckerAupdate.c 610 January 05 2014 16:17:21
cs_kroneckerH.c 726 January 05 2014 16:17:21
cs_kroneckerH.h 86 January 05 2014 16:17:21
cs_kroneckerI.c 1157 January 05 2014 16:17:21
cs_kroneckerI.h 142 January 05 2014 16:17:21
cs_kroneckerIupdate.c 382 January 05 2014 16:17:21
cs_leaf.c 978 January 05 2014 16:17:21
cs_load.c 373 January 05 2014 16:17:21
cs_lsolve.c 463 January 05 2014 16:17:21
cs_ltsolve.c 468 January 05 2014 16:17:21
cs_lu.c 3453 January 05 2014 16:17:21
cs_lusol.c 786 January 05 2014 16:17:21
cs_malloc.c 865 January 05 2014 16:17:21
cs_maxtrans.c 3893 January 05 2014 16:17:21
cs_multiply.c 1471 January 05 2014 16:17:21
cs_norm.c 436 January 05 2014 16:17:21
cs_omega.c 1527 January 05 2014 16:17:21
cs_omega.h 143 January 05 2014 16:17:21
cs_omegaupdate.c 357 January 05 2014 16:17:21
cs_permute.c 944 January 05 2014 16:17:21
cs_pinv.c 402 January 05 2014 16:17:21
cs_post.c 972 January 05 2014 16:17:21
cs_print.c 1085 January 05 2014 16:17:21
cs_pvec.c 293 January 05 2014 16:17:21
cs_qr.c 2983 January 05 2014 16:17:21
cs_qrsol.c 1596 January 05 2014 16:17:21
cs_randperm.c 799 January 05 2014 16:17:21
cs_rCinvwishart.c 3587 January 05 2014 16:17:21
cs_rCinvwishart.h 2660 January 05 2014 16:17:21
cs_reach.c 650 January 05 2014 16:17:21
cs_rinvwishart.c 996 January 05 2014 16:17:21
cs_rinvwishart.h 186 January 05 2014 16:17:21
cs_rR.c 1104 January 05 2014 16:17:21
cs_rR.h 332 January 05 2014 16:17:21
cs_rwishart.c 904 January 05 2014 16:17:21
cs_rwishart.h 180 January 05 2014 16:17:21
cs_scatter.c 752 January 05 2014 16:17:21
cs_scc.c 1748 January 05 2014 16:17:21
cs_schol.c 1110 January 05 2014 16:17:21
cs_sortdv.c 252 January 05 2014 16:17:21
cs_sortdv.h 105 January 05 2014 16:17:21
cs_spsolve.c 1196 January 05 2014 16:17:21
cs_sqr.c 3400 January 05 2014 16:17:21
cs_symperm.c 1532 January 05 2014 16:17:21
cs_tdfs.c 784 January 05 2014 16:17:21
cs_tmultiplyupdate.c 1379 January 05 2014 16:17:21
cs_tmultiplyupdate.h 112 January 05 2014 16:17:21
cs_transpose.c 959 January 05 2014 16:17:21
cs_updown.c 1567 January 05 2014 16:17:21
cs_usolve.c 470 January 05 2014 16:17:21
cs_util.c 3805 January 05 2014 16:17:21
cs_utsolve.c 469 January 05 2014 16:17:21
dcutopints.c 1662 January 05 2014 16:17:21
dcutpoints.h 251 January 05 2014 16:17:21
General.h 246 January 05 2014 16:17:21
inverseA.cc 3131 January 05 2014 16:17:21
inverseA.h 69 January 05 2014 16:17:21
lpzF.c 983 January 05 2014 16:17:21
lpzF.h 215 January 05 2014 16:17:21
MCMCglmm.cc 75745 January 05 2014 16:17:21
MCMCglmm.h 1339 January 05 2014 16:17:21
rbv.cc 3857 January 05 2014 16:17:21
rbv.h 64 January 05 2014 16:17:21
rIW.cc 1769 January 05 2014 16:17:21
rIW.h 386 January 05 2014 16:17:21
rtnorm.c 1940 January 05 2014 16:17:21
rtnorm.h 138 January 05 2014 16:17:21
rtnormR.cc 348 January 05 2014 16:17:21
rtnormR.h 161 January 05 2014 16:17:21
test.h 1333 January 05 2014 16:17:21

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