Medical imaging

Dicom utilities in matlab

The following Matlab project contains the source code and Matlab examples used for dicom utilities. A set of scripts, originally written to read in Siemens and Phillips format MR spectroscopy FIDs. Will navigate a file pointer through to the appropriate (group, element) tag in the file.

Ct project in matlab

The following Matlab project contains the source code and Matlab examples used for ct project. This program loads 30 or less DICOM format pictures,crops region defined by user, in defined picture,locates this region in all loaded files and represents a 3D picture of the selected volume.

Compute snr for mri parallel images using different technique in matlab

The following Matlab project contains the source code and Matlab examples used for compute snr for mri parallel images using different technique. The three techniques are The American College of Radiology (ACR) standard method, the parallel image reconstruction using a normal sum of squares (SoS) reconstruction, and the parallel image reconstruction using optimal coil sensitivity (OPT) (Kellman and McVeigh, 2005).

The function of this program is read the dicom images and save it in single mat file. in matlab

The following Matlab project contains the source code and Matlab examples used for the function of this program is read the dicom images and save it in single mat file. . This program is a small part from my program "MedPhys" which I designed it to be an assistance tool for the Medical Physicist. Run the file " StartProgram.m " to start this program.

Determine the necessity for global signal regression in matlab

The following Matlab project contains the source code and Matlab examples used for determine the necessity for global signal regression. Determine the Necessity for Global Signal Regression in Resting-State fMRI Studies Calculate GNI from preprocessed resting state data and a whole brain mask if GNI>3, global signal regression may not be necessary reference: Chen G, Chen GY, Xie C, Ward BD, Li W, Antuono P and Li SJ.

Reconstruction of image from projections by algebraic reconstruction technique in matlab

The following Matlab project contains the source code and Matlab examples used for reconstruction of image from projections by algebraic reconstruction technique. This code is as per SPECT reconstruction By: Martin Šámal Charles @ Regional Training Workshop on Advanced Image Processing of SPECT Studies 19-23 April 2004.

Subject and scan information from a dicom header to ascii file in matlab

The following Matlab project contains the source code and Matlab examples used for subject and scan information from a dicom header to ascii file. USAGE dicom_get_info_from_header dicom_get_info_from_header(dcm_files) dicom_get_info_from_header(dcm_files,file_name) INPUT DICOM_GET_INFO_FROM_HEADER by itself will ask for the DICOM files - DCM_FILES: list of DICOM files (cell array) - FILE_NAME: output file name.

Marching cubes in matlab

The following Matlab project contains the source code and Matlab examples used for marching cubes. This function uses a vectorized version of the marching cubes algorithm to compute a triangulated mesh of the isosurface within a given 3D matrix of scalar values at a given isosurface value.

3d visualization of density distribution in matlab

The following Matlab project contains the source code and Matlab examples used for 3d visualization of density distribution. Simple toolbox provide a visualization of bone (or other tissue) density distribution from DICOM: - Import DICOM directory - Apply threshold for segmentation of the volumetric structure of interest (like bone) - Tridimensional smooth of the volume - Visualization of the data in 3D view.

Dicom view in matlab

The following Matlab project contains the source code and Matlab examples used for dicom view. Purpose: GUI for viewing DICOM image sets GUI which performs the following tasks: - organize and load DICOM image set from folder - view transverse, sagittal and coronal slices - view 3D representation - vary threshold How to run: Click 'Select Path' in the top right of the GUI.

Beltrami filter in matlab

The following Matlab project contains the source code and Matlab examples used for beltrami filter. It has been implemented based on this paper: J.J. Fernandez, J. M. (2010). Three-dimensional feature-preserving noise reduction for real-time electron tomography (Bd. 20). Madrid, Spain: Digital Signal Processing .

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